PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95995

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YC

Protein Properties

Length: 276aa MW: 30174.1 Da PI: 4.6918

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95995	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.7	5.1e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r OMO95995 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSYNVF 60 DFLRDIVSRV PDYGHGHSDA AGDDRTISKR RKSAGDEGND SDEESKRSRM LDVGHAGTSG 120 RGRGRGRGRG RGRGARIAER DTHREIEPEP APTLQQCNKS HSTPRMVIDD ASEAKEPMKE 180 STIGEDDNLA VRNFDLNAEV DDHVDTKASA GAAAATTAGA VAATQPPSAE ATTETKHEEY 240 PGWSLSDMDK MAIDPIQLAQ LGRRLDEDEE DYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	130	RGRGRGRGRG
2	121	131	RGRGRGRGRGR
3	123	132	RGRGRGRGRG
4	123	133	RGRGRGRGRGR
5	125	134	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-69	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OMO95995