PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96056
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 257aa    MW: 27667.8 Da    PI: 8.2011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96056genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23.1e-2913116199
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C++ C l+p++     + +q++++ +++k++G++ +++l++a p++ r+ +++sl+yeA+ r+ +PvyG+vg++++++++l+q++++++l
  OMO96056  13 SCNGCRVLRKGCTETCSLRPCLqwlptALSQANATLFLAKFYGRAGLVNLINAGPQNLRPGIFKSLLYEACGRIVNPVYGSVGLMWSGKWHLCQAAVDAVL 113
               6*********************9995444899****************************************************************99988 PP

    DUF260  97 lke 99 
                ++
  OMO96056 114 NGA 116
               765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MVMDFQKLLM RMSCNGCRVL RKGCTETCSL RPCLQWLPTA LSQANATLFL AKFYGRAGLV  60
NLINAGPQNL RPGIFKSLLY EACGRIVNPV YGSVGLMWSG KWHLCQAAVD AVLNGAPIMQ  120
VSLDSELTDP SLALNKLSCD IRHVSKEKDQ KSSDDALRKI KSRGRFKRSA PKPKVVKEEV  180
YESASHESGL SLGGDGGGEG DAVSVETVEA SLAKTDESAD GSDLELELTL GFEPRPRKRA  240
NGCDGAACGM NLVKGLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-73LBD family protein