PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96320

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 168aa MW: 18365.1 Da PI: 9.7238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96320	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OMO96320 42 FSCNYCQRKFYSSQALGGHQNAH 64 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MDYQPNTSLR LSLPSNQLNL ELVLEPSSTS SSPHSPAEPR VFSCNYCQRK FYSSQALGGH 60 QNAHKLERTL AKKSRELSSA VRTHGGSNSP SGSSSSGSIS GSSHGQRVQS PVAPFDQHGR 120 AGRFPAGEIS YGRRDYGTSR EGIGSWSKSY RPENVQEEFN HLDLSLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-34	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO96320