PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96681

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 348aa MW: 38186.6 Da PI: 9.4037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96681	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	7e-18	72	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia++++ gR++k+c++rw++ OMO96681 72 RGHWRPAEDAKLKELVAQYGPQNWNLIAEHLQ-GRSGKSCRLRWFNQ 117 899***************************.*********996 PP
2	Myb_DNA-binding	56.3	7.6e-18	124	167	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ OMO96681 124 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 167 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGFQISSSLM EQSNKSLSFE PLESRGTKGA ACDGKDGFLG VEERKALSLK LGVEDESNKS 60 STKNGHTKLC ARGHWRPAED AKLKELVAQY GPQNWNLIAE HLQGRSGKSC RLRWFNQLDP 120 RINRRAFSEE EEERLLAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKHREQSSIY 180 RRRKPSSQSQ SQSLPKGLDV TVHNNASSDQ STISSNIDES ASTCTDLSLT PSSAKVPPGF 240 FTSFSPPHQM GSSGEKVVRC RGSGDLDKFY GSGNVLFYQQ GPMGVGMGVD QPVHSSDSNS 300 EVSAAESVGT NRTNHSISGE SGNGLNEKKK IINNINMPFI DFLGVGAS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGFQISSSLM EQSNKSLSFE PLESRGTKGA ACDGKDGFLG VEERKALSLK LGVEDESNKS  60
STKNGHTKLC ARGHWRPAED AKLKELVAQY GPQNWNLIAE HLQGRSGKSC RLRWFNQLDP  120
RINRRAFSEE EEERLLAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKHREQSSIY  180
RRRKPSSQSQ SQSLPKGLDV TVHNNASSDQ STISSNIDES ASTCTDLSLT PSSAKVPPGF  240
FTSFSPPHQM GSSGEKVVRC RGSGDLDKFY GSGNVLFYQQ GPMGVGMGVD QPVHSSDSNS  300
EVSAAESVGT NRTNHSISGE SGNGLNEKKK IINNINMPFI DFLGVGAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	4e-71	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO96681