PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96743
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 247aa    MW: 27892.5 Da    PI: 5.4623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96743genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.6e-1577125153
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
               s ykGVr+++ +g++ +eIrd +     + kr +lg++ t+eeAa+a+ a +++l
  OMO96743  77 SIYKGVRRRP-SGKFSSEIRDpF-----NkKRLWLGTYCTEEEAAAAYQAKKQEL 125
               57********.7*********55.....34******************9998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MNTTQKKTVK KDSKNLPMKL RVVYNDPDET DLSSDEEHEI NHRKNQNMGC VVKKISTTSA  60
MQNHVTSGSK KPRKFSSIYK GVRRRPSGKF SSEIRDPFNK KRLWLGTYCT EEEAAAAYQA  120
KKQELAKMIM AAEEDNNNNF SQLSPSVLEH AVSSNPMVNA DRAIMKQCGE DEESIKDLWK  180
DEPSILDLLE VPLPSAFESI DQLLSPYGYE DCLSFNSVNN QGLLPKKSDG MLIDLAWVDE  240
ILNLEGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17086KKPRKFSSIYKGVRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-14ERF family protein