PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96997
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 291aa    MW: 32561.2 Da    PI: 7.2371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96997genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-08177224455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  OMO96997 177 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 224
               8*************************9....35599999*********9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MADFTSDLQG FKQSFSFLDI DPSAMESLNH FGELNQSVNL DNNNSSALNF QSFLPFSNDN  60
FFSSNQQVHG NWSENLPANF VHQMSSSVSV AHNNNQPAVV TAKTEMFHEG CKKRKALDIV  120
SESSSGISSS PQVSESGQKR RNNSGRGKRA KSNNEKEEEK PKEVVHVRAR RGQATDSHSL  180
AERVRRGKIN ERLRCLQDIV PGCYKTMGMA VMLDEIINYV QSLQNQVEFL SMKLTAASTY  240
YDFNSESDAM EKMQRAKAQE AKELERLMRE GYVGGLACFH SSSSTTWSSL T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.17e-64bHLH family protein