PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO97157
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 319aa    MW: 35736.8 Da    PI: 6.2994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO97157genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31023.3e-32123224199
               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
               f+k+ltpsdv+k++rl++pk++ae++   ++ e++ l led++g++W+++++y++++++yv+tkGW++Fvk+n+L +gD+v F++  g+  + +l++  +r
  OMO97157 123 FDKALTPSDVGKLNRLIIPKQHAEKYfPPPNGEGILLNLEDRNGKQWRFRYSYWNTRQSYVMTKGWSRFVKDNKLVAGDIVSFHRRvGDsGKDSLFIDCRR 223
               89************************955566899*************************************************55477677777777777 PP

               S CS
        B3  99 k 99 
               +
  OMO97157 224 R 224
               6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MEGIIDGANM MQSTSESLLH ESRHLHTMKH ARGPGDRSLS TKRTNNEQND ATSNDFNINL  60
DSAKNELASA VSGNRHELED NEATGTVINP SGADDSMCLA SDSTLELSKS CSANTAIEKE  120
HMFDKALTPS DVGKLNRLII PKQHAEKYFP PPNGEGILLN LEDRNGKQWR FRYSYWNTRQ  180
SYVMTKGWSR FVKDNKLVAG DIVSFHRRVG DSGKDSLFID CRRRPDHAPD SASFHHQIQH  240
HHFPLHRSIP WSPSLMQPPS AMAAAKRLRL FGVNMECPIS ELLDEDETEI SCTTTEANAT  300
MVPQPPDHQF SSTPMDLDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-56B3 family protein