PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO97299
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 177aa    MW: 19346.6 Da    PI: 5.5746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO97299genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-161259355
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  OMO97299 12 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 59
              9***9.55.6*********843...5************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MASSSSGKHP MYRGIRCRSG KWVSEIREPR KTTRIWLGTY PTPEMAAAAY DVAALALKGS  60
EAVVNFPDSV PTYPLPPSTS SADIRKAAAA AALLKKAQTG GDQINVGRVH QHQHHEGQSE  120
EKNMTEEYVD EDVLLNLPNL LVDMAEGMLV SPPRISPHPS DDSPENSDGE SLWSYNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-45ERF family protein