PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98337
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 163aa    MW: 18743.9 Da    PI: 4.5781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98337genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.1e-23231221105
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
               lppGf F+P+d+el+  +L +k+ g +++  ++ik++d+y+++P++Lp +  k+ ++++e y+F+k+ k        +r+tk gyWkat + +++  ++g+
  OMO98337  23 LPPGFGFSPKDHELIEWFLVNKIMGIPIPY-NIIKDIDVYECDPRQLPtSdlKHGKTKNEAYYFTKAGK------TWRRTTKGGYWKATYE-QDINGRGGK 115
               79****************************.89***************5444444456699****9866......56899*********77.899999*** PP

       NAM  99 lvglkkt 105
                +g+k++
  OMO98337 116 IIGMKTI 122
               ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MAAVFHCVGD GRGEAGQSNE LILPPGFGFS PKDHELIEWF LVNKIMGIPI PYNIIKDIDV  60
YECDPRQLPT SDLKHGKTKN EAYYFTKAGK TWRRTTKGGY WKATYEQDIN GRGGKIIGMK  120
TIQWVVCVIR NKDDDIEKER KWSFYEEKAE EEEDDGDEDD DSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-17NAC family protein