PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98423
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 265aa    MW: 30882 Da    PI: 8.4512
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98423genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.7e-36211132103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+ +++++sw e+++sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fkkg k+ll++i+
      OMO98423  21 FLIKTYQLVDDPLTDHIVSWGEDETSFVVWRPPEFARNLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFKKGAKHLLSEIH 108
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      OMO98423 109 RRKTS 113
                   **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MEKCEELVFS VESQKSVPAP FLIKTYQLVD DPLTDHIVSW GEDETSFVVW RPPEFARNLL  60
PNYFKHNNFS SFVRQLNTYG FKKVVADRWE FANEYFKKGA KHLLSEIHRR KTSQSQTHQQ  120
LYHEQPQYLK PEDHLSLGWM DDQFQSPLPT SPHILTALSQ DNQRLRRKNY MLHSELAHMK  180
TLYNDIIYFI QNHVKPVANY QQKLSSMTPE LAFQDPDHIL HCSSTDQNAK SSNVCVLGKP  240
SEEPNNTVKL FGVPLSGKKR LFSKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-90HSF family protein