PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO98438

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YC

Protein Properties

Length: 248aa MW: 28604.6 Da PI: 10.6663

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO98438	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.5	2.9e-13	142	230	11	99
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++ + k ++P+ rik+i+k+++ + ++ ++ ka e fi ++ + + + +r++l ++++v + +dfl d vp++ OMO98438 142 GEEGEAKMCRFPMNRIKRIMKSEDSRIALPQDVVFIVNKATEKFIEQFCQDGYKSCVKDRRKSLSYKHLSTVVRERRRYDFLSDYVPEK 230 4567889999************9999********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MASSKKPKEE DKKRKSNSSS VVKDRKKAIK KPEKKTSSTK SPNRSKPDRK KAIKKPEKRT 60 SSTKSPNKSK PKPKPKPKPT PKSKPDNNKS KKMSSNGTLV EDPSSSNDSE EDENGKKVRS 120 KNVTPNNKRK RKEKIEENEE EGEEGEAKMC RFPMNRIKRI MKSEDSRIAL PQDVVFIVNK 180 ATEKFIEQFC QDGYKSCVKD RRKSLSYKHL STVVRERRRY DFLSDYVPEK IKAEDALKER 240 NLTETEAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	15	PKEEDKKRK
2	12	35	KKRKSNSSSVVKDRKKAIKKPEKK
3	12	54	KKRKSNSSSVVKDRKKAIKKPEKKTSSTKSPNRSKPDRKKAIK
4	129	134	RKRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	8e-34	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OMO98438