PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO98573

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 255aa MW: 29625.2 Da PI: 5.3682

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO98573	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.2	1.3e-26	2	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 +p GfrF+Ptdeel+ e L++kv + ++e+ + i e +iy++eP+dL+ ++v+ +++e y F+kr++ + + ++ +g Wkat + k++ s+ OMO98573 2 VPTGFRFNPTDEELL-EILHQKVVTGNVEAVHNfIVERNIYELEPQDLQwsESVALNSNERYCFCKRESDS------REVAGRGWWKATSHVKTISSAnnA 95 589**********.778888777776654444**********96346666889***98753......447889********998544 PP NAM 97 gelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g g k+ L+f+ +++++++ ktdW+mhey l OMO98573 96 GLILGYKRPLTFHrfkvnQKNRKDAFKTDWIMHEYGL 132 5569*****7776656777778*******76 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MVPTGFRFNP TDEELLEILH QKVVTGNVEA VHNFIVERNI YELEPQDLQW SESVALNSNE 60 RYCFCKRESD SREVAGRGWW KATSHVKTIS SANNAGLILG YKRPLTFHRF KVNQKNRKDA 120 FKTDWIMHEY GLRSITTEWR LCKIKYKGKE RFQEENVDIG ETAAEEGCGS SIINPMQMQL 180 DNHCAFQEHP ILPLNNDIYE IGNCPYWSNS SQFDQYPIPS SLINMQPLLD YNQSAQAPTE 240 QSPFPDLWFG SENWH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-17	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO98573