PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98813
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 182aa    MW: 21084.1 Da    PI: 4.3688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98813genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.91.7e-1894164170
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 
               ++Yn+YA++ GFsvrk +++ks+++g+++ r++ C keg+r+e+ k+ + +++r+r et+++C+a+l ++k
  OMO98813  94 DYYNRYAYKKGFSVRKGATRKSEKDGNVIGRRLFCAKEGFRQEKFKAnEANKKRHRGETHCDCNARLLINK 164
               69*****************************************98874667788999**********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MTSINGNESS IQEGWEVDEH IYNAVEFELE KENEDHEDNE CEGEDEKDNE CEGGDEYDSE  60
NVIGNEIIVY ENEEEVSIKP HVGMVFDSEE EAYDYYNRYA YKKGFSVRKG ATRKSEKDGN  120
VIGRRLFCAK EGFRQEKFKA NEANKKRHRG ETHCDCNARL LINKVVMDPG LFLCSLKNII  180
IY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-16FAR1 family protein