PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98862
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 231aa    MW: 25371 Da    PI: 7.3422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98862genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-1469115354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++h+e+ErrRR+riN  f++Lr+l+P a     kK++Ka+ L +++ ++++L
  OMO98862  69 KNHSEAERRRRARINGHFDTLRDLVPGA-----KKMDKATLLAEVIGHMREL 115
               58*************************9.....9*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MDQFSWSSNS YSSGFLINSG CQGKTRNGSF SSSSSSSLVL DTERGELVEA AMNLPRKGVS  60
AERNVVALKN HSEAERRRRA RINGHFDTLR DLVPGAKKMD KATLLAEVIG HMRELKKTAE  120
EACDGILIPT DTDEVRVEKQ GDGMDGNPCL IRASLCCDYK PGLLSDLRRA LDALHLIIVK  180
AEMATCEGRM KNVILVAKAS CKEWDSKEAS SSISTSTLDQ TLRLLDMIYL L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-24bHLH family protein