PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98884
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 125aa    MW: 14537.7 Da    PI: 5.7031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98884genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-11481073495
               SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                ++tl+d +g +W+vk+ +r ++++++l++GW  F +a+ L+    ++F+l+++  f   v+
  OMO98884  48 PEVTLRDINGMTWQVKVVVRESDQQILLGRGWPTFYDAHYLQGCVYLLFRLVKDYVF--EVS 107
               489***********************************************9988777..444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    
MYRGIYRNQS SAPPNYGMES FDGCGGIRAA LFPPPPSIYW RLERWIPPEV TLRDINGMTW  60
QVKVVVRESD QQILLGRGWP TFYDAHYLQG CVYLLFRLVK DYVFEVSVFC DCGIEVVDFR  120
SECCH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.14e-08B3 family protein