PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO99272

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YA

Protein Properties

Length: 1027aa MW: 117128 Da PI: 7.7699

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO99272	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	47.3	6.9e-15	413	465	5	58
CBFB_NFYA 5 YVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 VNaKQy +l q+ a+ + ++kl k+rkp lh+SRh h ++R+ gs GrF OMO99272 413 CVNAKQYLEVLSHGQACAEFQLQNKL-VKKRKPLLHKSRHLHEMNRATGSAGRF 465 59**********************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence
MELLPLVGEL ANLQELDLDQ TQIMFLPREI GKLLAFYTFA SIVLSNMRID VDPADKRWDE 60 SVEIVGKFTV GLIKRRLISR VPQEGEAEFR NWDKCLKFVN GENIPIEIKG VLKYSNSFFL 120 DRHATAKNLS EFGMENMKRL NYCLLAECNK METIIDEGNN DINDQSETHD PNSTENVVLQ 180 SLEHLRIYYM ENLGSIWKWP TRYGCMCNLK FLAMHSCPQL SNVLCPALLE NLVNLEELIL 240 EDCPRVTSLV SHPSVKPIIL PNKFLPSLKR LMLLYLPELV SISNGLPIAP KLESIGFYNC 300 PNLKSISKME LSSKTLKMIK GELWWWEDMK WNETEWGNRP DYLMHIFSPI NNKEDVMTQM 360 AGDRVLHELD YMEERINGTN LKQSTPCWTS QLMGSHQRAE VPLPSSAIDD RACVNAKQYL 420 EVLSHGQACA EFQLQNKLVK KRKPLLHKSR HLHEMNRATG SAGRFLMNKK ENENEQNDAA 480 SGDKSEFDIS KNLAKNDLAS PSSSSGDKSQ SNITSNSAIN EPALDLSTTA STPWSSRVMH 540 SPDLAQGCDV TSESERSFKD NVMRHHMQIE MNNSCGSVSK TQNEGRWQSF PGIIVSDPHL 600 LPDHAGEDSN KVSGWPIISG FPNSELYNYS AFNPVEKAKQ SETVPSYKLF GVELINQSSS 660 STPMENTTTQ LSTITTSHSF LHHMHMIGLS MRKMVIMMTM MMVTLGDDVT LTATMMIRSV 720 NLRKLKKKMK RILRKMDVAV TLLMMMMENN DKNLAGTKRK MLVKLVIVKT SKKLKKACAF 780 GLSNSNQCYI MELNFPSCVT KNPSLKDLCT VLVVANSVLQ TRNYIRLVDL LKSLVGDSQE 840 GQSTQRPPLF DGTNYQYWKN RMSVNMRAHD YEMWMVTIKG PFTTIEKDKN GNEVEKDSEN 900 WTQEYIRKVQ ANFKAINTIH YALNATEYNR ISTCETAKQI WDKLQDTHEG TSQERELKND 960 EDEEKKVAEQ KGLLVHKVSA LEEETEQVKM KAQKGTKRKR RLKLLPLLLS EKVVTLNEKQ 1020 MPTYVSW

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence

MELLPLVGEL ANLQELDLDQ TQIMFLPREI GKLLAFYTFA SIVLSNMRID VDPADKRWDE  60
SVEIVGKFTV GLIKRRLISR VPQEGEAEFR NWDKCLKFVN GENIPIEIKG VLKYSNSFFL  120
DRHATAKNLS EFGMENMKRL NYCLLAECNK METIIDEGNN DINDQSETHD PNSTENVVLQ  180
SLEHLRIYYM ENLGSIWKWP TRYGCMCNLK FLAMHSCPQL SNVLCPALLE NLVNLEELIL  240
EDCPRVTSLV SHPSVKPIIL PNKFLPSLKR LMLLYLPELV SISNGLPIAP KLESIGFYNC  300
PNLKSISKME LSSKTLKMIK GELWWWEDMK WNETEWGNRP DYLMHIFSPI NNKEDVMTQM  360
AGDRVLHELD YMEERINGTN LKQSTPCWTS QLMGSHQRAE VPLPSSAIDD RACVNAKQYL  420
EVLSHGQACA EFQLQNKLVK KRKPLLHKSR HLHEMNRATG SAGRFLMNKK ENENEQNDAA  480
SGDKSEFDIS KNLAKNDLAS PSSSSGDKSQ SNITSNSAIN EPALDLSTTA STPWSSRVMH  540
SPDLAQGCDV TSESERSFKD NVMRHHMQIE MNNSCGSVSK TQNEGRWQSF PGIIVSDPHL  600
LPDHAGEDSN KVSGWPIISG FPNSELYNYS AFNPVEKAKQ SETVPSYKLF GVELINQSSS  660
STPMENTTTQ LSTITTSHSF LHHMHMIGLS MRKMVIMMTM MMVTLGDDVT LTATMMIRSV  720
NLRKLKKKMK RILRKMDVAV TLLMMMMENN DKNLAGTKRK MLVKLVIVKT SKKLKKACAF  780
GLSNSNQCYI MELNFPSCVT KNPSLKDLCT VLVVANSVLQ TRNYIRLVDL LKSLVGDSQE  840
GQSTQRPPLF DGTNYQYWKN RMSVNMRAHD YEMWMVTIKG PFTTIEKDKN GNEVEKDSEN  900
WTQEYIRKVQ ANFKAINTIH YALNATEYNR ISTCETAKQI WDKLQDTHEG TSQERELKND  960
EDEEKKVAEQ KGLLVHKVSA LEEETEQVKM KAQKGTKRKR RLKLLPLLLS EKVVTLNEKQ  1020
MPTYVSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	443	KLVKKRK
2	723	731	RKLKKKMKR
3	725	731	LKKKMKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-21	NF-YA family protein

Link Out ? help Back to Top
Ensembl	OMO99272