PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO99318
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 245aa    MW: 27231.6 Da    PI: 8.2079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO99318genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19167201135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  OMO99318 167 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 201
               *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
METFDMAACL EDNLLDFGSD VGEEDEDEEK SKRLSNLNSS SSLNPNRTLP EFVEEELEWL  60
SNKDAFPAVE TSFILGNVEK HQSPVSVLDN SNSSSNSNSS GSTLLSNGSI VMYCCGNLKV  120
PVKARSKRLR KCRDLRNQEN SWWVYENVKN ANANVKGTGS RTIGRKCQHC GAEKTPQWRA  180
GPLGPKTLCN ACGVRFKSGR LVPEYRPASS PTFSTELHSN SHRKILEMRK QKGLTTLKPM  240
DIEKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.18e-49GATA family protein