PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO99686

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 465aa MW: 51415.6 Da PI: 4.957

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO99686	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	130	152	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ OMO99686 130 EDCAYYMKTGLCKFGSNCKFNHP 152 89********************9 PP
2	zf-CCCH	30.8	5e-10	176	200	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG Ck+G C+++H++ OMO99686 176 QTECKYYLRTGGCKFGKACRYNHSR 200 568********************95 PP
3	zf-CCCH	39.9	7.2e-13	221	245	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ OMO99686 221 GEKECPYYMRNGSCKYGANCRFNHP 245 7899********************9 PP
4	zf-CCCH	28.5	2.7e-09	357	383	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ ++Ck++H++ OMO99686 357 PGQPECTYFMKTGDCKFKSNCKYNHPK 383 5789*********************96 PP
5	zf-CCCH	34.3	3.9e-11	404	428	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++r+G+Ck+G+ CkF H+ OMO99686 404 DQSMCSHYSRYGICKFGPACKFDHS 428 5678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSQSEETPIS DITPSDSAPH LGLHSPDPDP TPIPDPDLNH SAEESLLHQN NLHQQLQDLD 60 LKAEEEEEAA AEEKDDGDRE SDKDADVYAA GEEEEDDDDD EEKNENENDD ENVKKNEGRR 120 SHYPVRPEAE DCAYYMKTGL CKFGSNCKFN HPVRRKNQAV KEKIKEKDES AEKPSQTECK 180 YYLRTGGCKF GKACRYNHSR AKNSAAPILE LNFLGLPIRP GEKECPYYMR NGSCKYGANC 240 RFNHPDPTTT AAGDPPSAYG NGGSVSSQAA SQVNMPSWSS PRTVNETAAY MPMMFPPTQG 300 VPPPNPEWNG YQTTVYPPAE RGLHPTPAYV MSNPSTESTV YTHHQPQMVV DEFPVRPGQP 360 ECTYFMKTGD CKFKSNCKYN HPKNRVAKPA PCTLSDKGLP LRPDQSMCSH YSRYGICKFG 420 PACKFDHSIQ AAPPPEPLPF SNSAATEPSG FAGSNGTDTA VKQPV

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSQSEETPIS DITPSDSAPH LGLHSPDPDP TPIPDPDLNH SAEESLLHQN NLHQQLQDLD  60
LKAEEEEEAA AEEKDDGDRE SDKDADVYAA GEEEEDDDDD EEKNENENDD ENVKKNEGRR  120
SHYPVRPEAE DCAYYMKTGL CKFGSNCKFN HPVRRKNQAV KEKIKEKDES AEKPSQTECK  180
YYLRTGGCKF GKACRYNHSR AKNSAAPILE LNFLGLPIRP GEKECPYYMR NGSCKYGANC  240
RFNHPDPTTT AAGDPPSAYG NGGSVSSQAA SQVNMPSWSS PRTVNETAAY MPMMFPPTQG  300
VPPPNPEWNG YQTTVYPPAE RGLHPTPAYV MSNPSTESTV YTHHQPQMVV DEFPVRPGQP  360
ECTYFMKTGD CKFKSNCKYN HPKNRVAKPA PCTLSDKGLP LRPDQSMCSH YSRYGICKFG  420
PACKFDHSIQ AAPPPEPLPF SNSAATEPSG FAGSNGTDTA VKQPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-129	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO99686