PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO99832

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 443aa MW: 50798.9 Da PI: 5.7176

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO99832	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.4e-19	194	240	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+teEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l OMO99832 194 KGQWSTEEDRKLVQLVEQYGLRKWSHIAQMLP-GRIGKQCRERWHNHL 240 799***************************.***********97 PP
2	Myb_DNA-binding	24.7	5.6e-08	246	274	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 r+ WT+eEd lv+ + +lG++ W+ Ia++ OMO99832 246 RDTWTEEEDRVLVETHIELGNK-WAEIAKR 274 789*****************.***85 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MNMTSQGQIQ QRMLFSDEFP LETTPSSKGF VNNFQDFHNH HLEHQIDHVN GSSSNPVFGL 60 QTTCYDPFDH ASIFPHGYST NNDVDFYEWK PFAADHSNVG HGHVMNNLQS GGFFNLSQWV 120 INSDDLIMGS SENVGFNLRF DHFQEIKPMN FVVPDELSCV TAENAYYKKA EMNKNKALTS 180 TKKNSKVCKK SVVKGQWSTE EDRKLVQLVE QYGLRKWSHI AQMLPGRIGK QCRERWHNHL 240 RPDIKRDTWT EEEDRVLVET HIELGNKWAE IAKRGSMLQD YIRSLNLDNQ PSCSNKCQGK 300 TSNINGINAI VANINGSTKV STYQRTQALE FCPSNDRLVP EYDFNEVPDF SFDEKLMLQE 360 TCSLDSLLDE IPSAPINVAD ADNYDPGKSF EIDLMGLEVK KELDLIEMIS GQQPIRPQKT 420 NSKQDNYNFL RFNLTIFRFA LIT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MNMTSQGQIQ QRMLFSDEFP LETTPSSKGF VNNFQDFHNH HLEHQIDHVN GSSSNPVFGL  60
QTTCYDPFDH ASIFPHGYST NNDVDFYEWK PFAADHSNVG HGHVMNNLQS GGFFNLSQWV  120
INSDDLIMGS SENVGFNLRF DHFQEIKPMN FVVPDELSCV TAENAYYKKA EMNKNKALTS  180
TKKNSKVCKK SVVKGQWSTE EDRKLVQLVE QYGLRKWSHI AQMLPGRIGK QCRERWHNHL  240
RPDIKRDTWT EEEDRVLVET HIELGNKWAE IAKRGSMLQD YIRSLNLDNQ PSCSNKCQGK  300
TSNINGINAI VANINGSTKV STYQRTQALE FCPSNDRLVP EYDFNEVPDF SFDEKLMLQE  360
TCSLDSLLDE IPSAPINVAD ADNYDPGKSF EIDLMGLEVK KELDLIEMIS GQQPIRPQKT  420
NSKQDNYNFL RFNLTIFRFA LIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	8e-72	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO99832