PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP00165

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 371aa MW: 41111.5 Da PI: 8.3427

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP00165	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl OMP00165 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP
2	Myb_DNA-binding	72.5	6.6e-23	34	85	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ OMP00165 34 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 85 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MFQPKKPSTM NSHDRGMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DASALDLQRN AASSSGMMAR 120 SMNDNSHMVD AIRMQMEVQR RLHEQLEVQK HLQLRIEAQG KYMQSILEKA CQTLAGENNM 180 AAGGGGGSYK GMGGNQGVPD MGTMKDFSPL NFPPFQDLNI YGGDQLDHHL HHNMDTRPSL 240 EAFLPSNNDA ICLGNKKRPN PYSGSGKSPL IWSDELRLQD LGTAPSSCLD DPFKTDQQIQ 300 IGPPSLDRTT DLDSISDIYE AKPVLSGDGM SEKKFEASSK LERPSPRRAA LQTDQRMNPM 360 SVSQGRNSPF G

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MFQPKKPSTM NSHDRGMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DASALDLQRN AASSSGMMAR  120
SMNDNSHMVD AIRMQMEVQR RLHEQLEVQK HLQLRIEAQG KYMQSILEKA CQTLAGENNM  180
AAGGGGGSYK GMGGNQGVPD MGTMKDFSPL NFPPFQDLNI YGGDQLDHHL HHNMDTRPSL  240
EAFLPSNNDA ICLGNKKRPN PYSGSGKSPL IWSDELRLQD LGTAPSSCLD DPFKTDQQIQ  300
IGPPSLDRTT DLDSISDIYE AKPVLSGDGM SEKKFEASSK LERPSPRRAA LQTDQRMNPM  360
SVSQGRNSPF G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-116	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMP00165