PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP00332
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 248aa    MW: 26164.1 Da    PI: 9.0002
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP00332genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.85.4e-3344100360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++rY+eClkNhA+s+GghavDGCgEfm++ g+egt +alkCaAC+CHRnFHR+e e e
     OMP00332  44 SIRYRECLKNHAVSIGGHAVDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKEAEGE 100
                  689*************************9.999*********************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGMAVPPGYD SSLGNSSAAR SKMGPASGGE GAASATPRKV GSTSIRYREC LKNHAVSIGG  60
HAVDGCGEFM AAGDEGTLDA LKCAACNCHR NFHRKEAEGE ANIYNNPHHQ QHHPQFSPYY  120
RAPPPAGYLH LTPPPQHRPL ALPAASGGGG GGGGIGGGGY SREDEDVSNP SSSGGGGGGG  180
SGGLKKRFRT KFTPDQKEKM LDFAERLGWR IQKHDEAAVE QFCEESGVKR HVLKVWMHNN  240
KHTLGKKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-70ZF-HD family protein