PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP00344
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 233aa    MW: 26603.1 Da    PI: 8.6168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP00344genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.3e-1671632128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.......tgkrknra................. 77 
                pGfrF+Pt e ++++yL+  ++g++l+  ++++e+d+y   ePw+L +  ++++  w f + + k+ +       t      +                 
  OMP00344   7 RPGFRFSPTGEVVLQCYLRDAINGQNLPS-DIFTEADLYGDkEPWKLFN-PNHSHPYWVFTHLKMKRDSvsvakqtT------Tkkkgkgnskakknreee 99 
               79**************************9.99******97549****53.233334454444444433333321110......011233444444444556 PP

       NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                      +  g Wk    +  + s +ge+ g  +   f        +g++p+ ++ +W+mhe+++
  OMP00344 100 eekhdrtAGGGSWKGRSVHDILSSDDGEKLGFDREYKFKlnhddegRGSNPN-SNGNWIMHEFSI 163
               66555548899***98887666666999999999999997777755556666.699*******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MPLQSLRPGF RFSPTGEVVL QCYLRDAING QNLPSDIFTE ADLYGDKEPW KLFNPNHSHP  60
YWVFTHLKMK RDSVSVAKQT TTKKKGKGNS KAKKNREEEE EKHDRTAGGG SWKGRSVHDI  120
LSSDDGEKLG FDREYKFKLN HDDEGRGSNP NSNGNWIMHE FSIKGCDLVI CEIKNLKRKR  180
KGTERDSHDL DDDSRVSKKL DVGDRDHQLQ VCAITENKLG LLIPLSLMMM MIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-09NAC family protein