PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP00943

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 207aa MW: 24051.9 Da PI: 8.357

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP00943	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.3	2e-25	98	147	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++k+F+ pi +AAkeL+v+lTvLK++CR++ I+RWPhRkiksl OMP00943 98 TPLELEEIQKFFNFPISQAAKELNVGLTVLKKRCRELKIMRWPHRKIKSL 147 5689********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
FLDFKDLIDE FALFDNNSSS SATLRPSLNE DMLVDVKPKP VVKTEVDSFE LYCDKITYID 60 DGNSSNALAL TVKREYGEVS DWEGEQQIRS ICGRKRTTPL ELEEIQKFFN FPISQAAKEL 120 NVGLTVLKKR CRELKIMRWP HRKIKSLKAL IDNVKELGLT DEILMLEEHK KMLEKLPDME 180 LTDRTKRLRQ ACFKANYKKR RSLGICC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-46	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OMP00943