PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP01039

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 775aa MW: 89333.8 Da PI: 8.5258

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP01039	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	7e-20	67	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+++Ake GF +r+++s +r++e+++r +vC +eg+ +e++k+ +k++r+ ++ r gC a +kv+k k ++kw+v+++ +eHnH+++ OMP01039 67 QFYKTFAKEQGFGIRIRSSIMASRSDEVISRIYVCCNEGQYKENSKNecvddVKKTKRKCSVARSGCGALFKVSKVKnSEKWVVKSFLNEHNHHMV 162 6*****************************************999998889999999************9999************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MDCSSTKDVQ DFCDIQNMEV REQIELANES VSLEVVNLEN TIVSPNVVEE FAPYIGKLFE 60 SLGEAEQFYK TFAKEQGFGI RIRSSIMASR SDEVISRIYV CCNEGQYKEN SKNECVDDVK 120 KTKRKCSVAR SGCGALFKVS KVKNSEKWVV KSFLNEHNHH MVSPKSVFYL RCHKKMAAAA 180 KSLVQQFNEE GIPTGKVASL FGNVDKQFSD RDCWNHLRDL RRKNLDVGDA QAVLCYFRRK 240 QAENPNFFYA IQCDGEDRLV NLFWVDAQSR LAYDKFGDAI TFDTTYKTNK YSMPFAPFVG 300 INHHCQSILF GCGLLQDESE QTFIWLFETW LEAMHQKAPV SIITDQDLAI GAAVRKVFPD 360 SRHRLCLWHI KKKFPEKLSH IYHKKSDFKR ELKKCIRESA TVEEFEKTWH ELMVKNGLKQ 420 HEWLQGLYQI RTSWIPVYNQ ETFFAGMNTT QRSESINSFF DSFVDSTTTL KQFVVRYEKA 480 LASRHEKERK EDFESRHKSR ILRIGSKMEY HGALVYTKKV FTLFQDELVK SNQFIKEKIS 540 KNGSCYEYKV SSCFDSRDSF LVSMDLSSKV GTCKCNLFEF KGILCRHILA IFHLKNVVEI 600 PSHFILKRWT KEANKGNVIF ENTPSFEDDL EKSAAARCLH VCRLINQLSS FAEKSKEQYK 660 VIVGDLDQIF KKVLTMEEDN ISSEKPVDDL IHDAMESQQN QSNHIPLVNI GDPHISQTKG 720 RKKSGHESQN NRFKSGLEIA LANQTVKKRT CHSCGGYGHN KRTCKGKQNS TDIPT

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MDCSSTKDVQ DFCDIQNMEV REQIELANES VSLEVVNLEN TIVSPNVVEE FAPYIGKLFE  60
SLGEAEQFYK TFAKEQGFGI RIRSSIMASR SDEVISRIYV CCNEGQYKEN SKNECVDDVK  120
KTKRKCSVAR SGCGALFKVS KVKNSEKWVV KSFLNEHNHH MVSPKSVFYL RCHKKMAAAA  180
KSLVQQFNEE GIPTGKVASL FGNVDKQFSD RDCWNHLRDL RRKNLDVGDA QAVLCYFRRK  240
QAENPNFFYA IQCDGEDRLV NLFWVDAQSR LAYDKFGDAI TFDTTYKTNK YSMPFAPFVG  300
INHHCQSILF GCGLLQDESE QTFIWLFETW LEAMHQKAPV SIITDQDLAI GAAVRKVFPD  360
SRHRLCLWHI KKKFPEKLSH IYHKKSDFKR ELKKCIRESA TVEEFEKTWH ELMVKNGLKQ  420
HEWLQGLYQI RTSWIPVYNQ ETFFAGMNTT QRSESINSFF DSFVDSTTTL KQFVVRYEKA  480
LASRHEKERK EDFESRHKSR ILRIGSKMEY HGALVYTKKV FTLFQDELVK SNQFIKEKIS  540
KNGSCYEYKV SSCFDSRDSF LVSMDLSSKV GTCKCNLFEF KGILCRHILA IFHLKNVVEI  600
PSHFILKRWT KEANKGNVIF ENTPSFEDDL EKSAAARCLH VCRLINQLSS FAEKSKEQYK  660
VIVGDLDQIF KKVLTMEEDN ISSEKPVDDL IHDAMESQQN QSNHIPLVNI GDPHISQTKG  720
RKKSGHESQN NRFKSGLEIA LANQTVKKRT CHSCGGYGHN KRTCKGKQNS TDIPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-166	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMP01039