PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP01094
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 296aa    MW: 33528 Da    PI: 7.4152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP01094genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-5381321128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
               lppGfrFhPtdeelv++yL++k++++++ +  +i+e+d+yk++PwdLp  +  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ +   + vg
  OMP01094   8 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKFDPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGQ--PKPVG 105
               79**************************99.88***************65556799************************************98..789** PP

       NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
               +kk Lvfy+g+apkgekt+W+mheyrl
  OMP01094 106 IKKALVFYSGKAPKGEKTNWIMHEYRL 132
               *************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MTATELQLPP GFRFHPTDEE LVMHYLCRKC ASQPIAVPII AEIDLYKFDP WDLPDLALYG  60
EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGQ PKPVGIKKAL VFYSGKAPKG  120
EKTNWIMHEY RLADVDRSAR KKNSLRLDDW VLCRIYNKKG SIEKQQPQGS VTRKAFSAAV  180
MEDKKPDIRA LGMDTCGLPP APTGAVNDYV YFDTSESVPR LHTDSSCSEH VVSPEFTCEV  240
QSEPKWKDWG GANNNALDFP YNYMDATVDA GFASQFQSNN QLSPLQDMFM YLQKPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-158NAC family protein