PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP01146

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 664aa MW: 75195.4 Da PI: 5.5027

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP01146	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.8	4.2e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+v+yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s ++++ OMP01146 6 LPPGFRFHPTDEELIVYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-QTRA 104 79**************************.99***********6434555777**********************************.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+y+grap+g++tdWvmheyrl OMP01146 105 VGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 *************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MAPVSLPPGF RFHPTDEELI VYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDDRECET PSSGLQSFTL TNLDSISVVH LGLVGEFTNV SGCDAYALCR 180 VFKKSATGPK IGEHYPAATT SNNQMTSEQH SSSMELYSEG RCEESSDFAI PVDTCSPSIL 240 NRSSVHEARD VKCMQSMLPQ DHHAFGFSNP SFSGYGNLAY PPSKVDVALE CARLQHRLSL 300 PPLEVEDFPQ VGFINNYKVM RTSNNPLRES QVETDILQEI LSVAHASQEL INPTGGGHDH 360 DAWGGGSCSN ANDFTFMTTA NNCSFEDSGA RSIDISDLHE DFKPERMAEN LRWVGMSNKD 420 LEQYCFMEDN KIVPIENISS FSRNEDNIQV VGESGHDYNC TGFNENDTHE IEGFPQGFID 480 DDPSEHFLDE GNMEDLASSP SFEVVEDIKI NHGMFVSTRQ VANTFFHQIV PSQTVKVHQN 540 PAKAESHETI IRYNKGNNTS FFRKFNSFAR GKFMEMAAFT EPCKKTTSAL LWMVMLLLMH 600 SFCPDEDMEN DKEREEKLAM TVWNKKKGSY LLVKASNCVV DVNWEGIRKP SPKVEDKFIL 660 IVLF

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MAPVSLPPGF RFHPTDEELI VYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDDRECET PSSGLQSFTL TNLDSISVVH LGLVGEFTNV SGCDAYALCR  180
VFKKSATGPK IGEHYPAATT SNNQMTSEQH SSSMELYSEG RCEESSDFAI PVDTCSPSIL  240
NRSSVHEARD VKCMQSMLPQ DHHAFGFSNP SFSGYGNLAY PPSKVDVALE CARLQHRLSL  300
PPLEVEDFPQ VGFINNYKVM RTSNNPLRES QVETDILQEI LSVAHASQEL INPTGGGHDH  360
DAWGGGSCSN ANDFTFMTTA NNCSFEDSGA RSIDISDLHE DFKPERMAEN LRWVGMSNKD  420
LEQYCFMEDN KIVPIENISS FSRNEDNIQV VGESGHDYNC TGFNENDTHE IEGFPQGFID  480
DDPSEHFLDE GNMEDLASSP SFEVVEDIKI NHGMFVSTRQ VANTFFHQIV PSQTVKVHQN  540
PAKAESHETI IRYNKGNNTS FFRKFNSFAR GKFMEMAAFT EPCKKTTSAL LWMVMLLLMH  600
SFCPDEDMEN DKEREEKLAM TVWNKKKGSY LLVKASNCVV DVNWEGIRKP SPKVEDKFIL  660
IVLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-160	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP01146