PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP01679

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 696aa MW: 77897.5 Da PI: 8.6038

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP01679	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	5.2e-12	10	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 ++ W t+E++ll++av+++G+++W+++a +++ + +t+ +c+ ++q+++ OMP01679 10 KQTWGTWEELLLACAVHRYGPDSWDSVAMELQkrtstlqhLSLTPLSCQQKFQDLK 65 789*****************************999999999999999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MAKPDNFPEK QTWGTWEELL LACAVHRYGP DSWDSVAMEL QKRTSTLQHL SLTPLSCQQK 60 FQDLKRRFAE NDNGGGDDAK ANNNKVSTTA VPWVDELRKL RVAELRREVQ QYDLSILSLK 120 LKVQRLKEER EQSLQENRKE PKKPDQEREK EIDKKEEEKE AEDQTQKPVQ SEEESNQENR 180 SVNESNSTDL KDENLRTGIE KAKVESVPVE LERCETGKEV ENVKPAGEDS CNGSCDSVVK 240 ESAENPERVD LEREPGDSPE SVAESKGEEP NTESSDVQSS ASLSGNEKKH AELDEPDERD 300 NEELDQSPSI KEVSIESQPL VEFLEILLSH KFSSFFERQL ESQDTPDYLK LVRQHLDFET 360 IQMRLKEGWY SGCKSKFFRD LLLLLNNAIV FFGKKSSEYK AAMEFRVLVS KEIAVQIPNS 420 NFLHKEQSHE SQMPLKTEPE PSLSLSINPK LSVPLIACRK RSSITAKASS SSGQEKKRQP 480 ITTLMNEKPV LDWKQHENPS EKAEESLVTK KRTRERSASG ARKASKNVKT RNSTNTNKNS 540 DANSNTAISS KGVSSNENSE AKAEKEKTNT NVSSKKRSAA NFLNRMRRSS SSNNGPLVET 600 LKGVIGSDNG KGDGGEQKKA SSSKVDQKKE QISTPRTRSG GKKAKEQGSP AKKGTRRPPK 660 RAAAAASPST PSVTAKRGRE VENDSGTGNA KKRLRK

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MAKPDNFPEK QTWGTWEELL LACAVHRYGP DSWDSVAMEL QKRTSTLQHL SLTPLSCQQK  60
FQDLKRRFAE NDNGGGDDAK ANNNKVSTTA VPWVDELRKL RVAELRREVQ QYDLSILSLK  120
LKVQRLKEER EQSLQENRKE PKKPDQEREK EIDKKEEEKE AEDQTQKPVQ SEEESNQENR  180
SVNESNSTDL KDENLRTGIE KAKVESVPVE LERCETGKEV ENVKPAGEDS CNGSCDSVVK  240
ESAENPERVD LEREPGDSPE SVAESKGEEP NTESSDVQSS ASLSGNEKKH AELDEPDERD  300
NEELDQSPSI KEVSIESQPL VEFLEILLSH KFSSFFERQL ESQDTPDYLK LVRQHLDFET  360
IQMRLKEGWY SGCKSKFFRD LLLLLNNAIV FFGKKSSEYK AAMEFRVLVS KEIAVQIPNS  420
NFLHKEQSHE SQMPLKTEPE PSLSLSINPK LSVPLIACRK RSSITAKASS SSGQEKKRQP  480
ITTLMNEKPV LDWKQHENPS EKAEESLVTK KRTRERSASG ARKASKNVKT RNSTNTNKNS  540
DANSNTAISS KGVSSNENSE AKAEKEKTNT NVSSKKRSAA NFLNRMRRSS SSNNGPLVET  600
LKGVIGSDNG KGDGGEQKKA SSSKVDQKKE QISTPRTRSG GKKAKEQGSP AKKGTRRPPK  660
RAAAAASPST PSVTAKRGRE VENDSGTGNA KKRLRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-98	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMP01679