PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02011
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 329aa    MW: 36769.8 Da    PI: 4.5129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02011genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1775126155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+++++g
  OMP02011  75 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDMAALEYRG 126
               89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MAEGAPFTEE SPGIDGLGGL RPISGTRVLG ITFRTKKEDK IDRYEKEIEE MKKVSKEEYL  60
ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYNTQ EEAAAAYDMA  120
ALEYRGTNAV TNFDISHYIE RLKQKGILFL DQTREKVPDS VEAERAEPDV EQAQERKPPQ  180
EQVEQQGDEA ENPQHFQYMQ IQAQLPSVDN ATMVGMEPAV SSNELAWSFC MDSGLNSFLV  240
PDFPLEKTGE LPKLFDHTGF EDNIDLIFDI GPNGNEGNRE CISDDASCGV EVGTLVNMEE  300
DNGKERLLLS SSLTDSPSSS TTSVSCNYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-60ERF family protein