PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02105
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 251aa    MW: 27524.6 Da    PI: 4.6415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02105genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1955105155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  OMP02105  55 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 105
               68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MTDQPQNSET ESSSNSLSSP PLSPSSPNST TATLNPKPET DSKKNKRMRD SSKHPVYRGV  60
RMRNWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA LSIKGNSAIL NFPELANSLP  120
RPVSLAPRDV QAAAAKAAQM EKFDSPSPSP STTSSSTLSS SSSLSSLVSQ MDLSSSGSDE  180
LSEIVELPSL GTSYDSVELK NEFVFDSSVD QWFYPPPWLQ SMEDCGYVVD QLTVPESILQ  240
NGFEEGLLWD Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KKNKRMR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-69ERF family protein