PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02209
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 212aa    MW: 23660.9 Da    PI: 7.8956
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02209genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY228.71.5e-70101752170
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesastsvsse 99 
               d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl +s+  +   llee  + + n+  n    +s++++ +  
  OMP02209  10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLAHSFFSPshnLLEEISNPSPNFLLN----QSNTNDFNLP 106
               577899****************************************99999999999999999999887222333433333333333....3333333332 PP

     YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++  ++e+pr+p + rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  OMP02209 107 --TRGITDELPRPPVITRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 175
               ..3678999***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSSSTLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG  60
LLLPSANQFH LAHSFFSPSH NLLEEISNPS PNFLLNQSNT NDFNLPTRGI TDELPRPPVI  120
TRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQT  180
TVKKTNVRQQ EGEDVLMKDG FFASANVGVS PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-88YABBY family protein