PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP02667
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 306aa    MW: 32557 Da    PI: 8.6144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP02667genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11257302655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  OMP02667 257 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 302
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MYPSSSSSSS QKSMGHTGLT RYGSAPGSLL TTAVDSVIGA DPTLVGHYFS ADSSSVTSES  60
TCKVSLSNDP QAPKVSAAAA PHHGSYAGPS SSSLVRQRSS PAGFLSHLTT ENGFSVTRGN  120
RSYTSHGGAN GGPGVSRLKS QLSFTRQDSL SQISEVSENL EGVSSSGNHQ NAAHSFAGFG  180
MDSWDNTNSI VFSAPSSKRA KNIDGDFYTC LNGLETQFSL PQTTLEMATV EKLLHIPEDS  240
VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM LDLAVQHIKG  300
LQNEVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-72bHLH family protein