PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP02914

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1653aa MW: 186094 Da PI: 8.5957

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP02914	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00097	1537	1562	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L H r+ + OMP02914 1537 YQCDmeGCTMSFGSKQELAMHKRNvC 1562 99********************9877 PP
2	zf-C2H2	13.2	0.00027	1561	1584	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H OMP02914 1561 VCPvkGCGKKFFSHKYLVQHRRVH 1584 69999*****************99 PP
3	zf-C2H2	11.6	0.00086	1620	1646	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H OMP02914 1620 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1646 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1653 aa Download sequence
MAASSLSPEP SQEVFPWLKS LPLAPEYRPT FAEFQDPIAY IFKIEKEASQ YGICKIIPPV 60 PPAPKKTAIG NLNRSLLARA AANTSSDSKP APTFTTRQQQ IGFCPRKPRP VQKPVWQSGE 120 HYTFQEFEAK AKNFERNYLK RYSKKGSLSA LEIETLYWKA TVDKPFSVEY ANDMPGSAFV 180 PLSSKKSSGG GRETGEGVSV GETPWNMRVV SRAKGSLLRF MKEEIPGVTS PMVYIAMLFS 240 WFAWHVEDHD LHSLNYLHMG AGKTWYGVPR DAAVAFEEVV RIDGYAGEFN PLVTFSTLGE 300 KTTVMSPEVF VRAGIPCCRL VQNAGEFVVT FPRAYHSGFS HGFNFGEAAN IATPEWLRVA 360 RDAAIRRASI NYPPMVSHFQ LLYDLAHELC SGVPVSINAK PKSSRLKNKT KSEGETLVKE 420 LFVQNLIQNN ELLHILGKGS SVVLLPKSSC DISLGSDLRV ASQLRINPRM PLGLSNYKEV 480 VKSSKDLASD EMLGGHEEIK GVKGFYPVKG KFASIYEGNR DSSYSGNDYL SRLSSNTLNI 540 STERENAVQG DVLSDQRLFS CVTCGIVCFS CVAVLQPTEQ ASRYLMSADC SFFNDWTVGS 600 GATRDGFTVA HVDAITSEQN LSTRWINKRD PNSVCDVPVQ SIHCKLQSTD QSNQLVEDTE 660 KGGGISALGL LASAYGNSSD SEDHNEPNAT DETNSANVSP QRNFQYTGSS PGDANGSHNL 720 SLSRVDSEEE APAHVMDCYS DPGSRRGDTK TRSPQTSDHA VEFETDNLAS RRSNGLEDKF 780 RDPVTASHAN PGYSPVTHGT ENMRFSKAIG LIENADMPFA PRSDEDSSRM HVFCLEHAAE 840 VEQQLCQIGG VHVFLLCHPE YPKIEAEAKL VAEELGIDYA WNDIIFGDAT KEDEERIRSA 900 LDSEDAIPGN GDWAVKLGIN LFYSANLSRS SLYSKQMPYN CVIYNAFGRN SPASSPTKLN 960 VYGRRSKQKK VVAGKWCGKV WMSNQVHPFL TQRDPQEQEQ ERNFHAWATS DENLDRKPEN 1020 VRKAETTKVA KKFNRKRKIR AGIASSKKVK CIETEDANSD DSLGGSSLRQ QQRFIRGKQP 1080 RLIEKEEAVS YDSQEDDSLL SQRILSRKKQ TEFVDREDAE SEDAEEEFTH QQPWRKLKGK 1140 QGKYVEEDDA VSGDSLDEGS LQQYRRVKRS WQAKCVERED AVSDDDFEET SHQMRRRIPK 1200 GRQIKSFERN DAISDDSQVD NSLKQYRRMP KGRQSKFVER DDAMSDDASE GDSQHDHHGR 1260 ISRGKQMKCM ETDDAFSDDS LEDNPQQHRG IPRSKGSKFT DREDVGSFDS LKRNSLQQHR 1320 RVCRSQLTKF IDRDDAVSSD SPDDSSLQQP RRILKSKQTK ILEREDAVSE DSLDDTSQQQ 1380 LRKTPRSRQG KFIEREDAAS YDSLEEDYQP SRTLRSRNKK APTPRQIKQE TPRNVKQGKR 1440 RTTKQVSSQQ MKQATPRNKN IKIEQSARQC NSYGEDELEG GPSTRLRKRV RKPLKESEPK 1500 PKEKKKQASK KKVKNASNVK TLSGHSTTKV RDEEAEYQCD MEGCTMSFGS KQELAMHKRN 1560 VCPVKGCGKK FFSHKYLVQH RRVHMDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY 1620 VCAEEGCGQT FRFVSDFSRH KRKTGHSVKK GRG

Sequence ? help Back to Top

Protein Sequence Length: 1653 aa Download sequence

MAASSLSPEP SQEVFPWLKS LPLAPEYRPT FAEFQDPIAY IFKIEKEASQ YGICKIIPPV  60
PPAPKKTAIG NLNRSLLARA AANTSSDSKP APTFTTRQQQ IGFCPRKPRP VQKPVWQSGE  120
HYTFQEFEAK AKNFERNYLK RYSKKGSLSA LEIETLYWKA TVDKPFSVEY ANDMPGSAFV  180
PLSSKKSSGG GRETGEGVSV GETPWNMRVV SRAKGSLLRF MKEEIPGVTS PMVYIAMLFS  240
WFAWHVEDHD LHSLNYLHMG AGKTWYGVPR DAAVAFEEVV RIDGYAGEFN PLVTFSTLGE  300
KTTVMSPEVF VRAGIPCCRL VQNAGEFVVT FPRAYHSGFS HGFNFGEAAN IATPEWLRVA  360
RDAAIRRASI NYPPMVSHFQ LLYDLAHELC SGVPVSINAK PKSSRLKNKT KSEGETLVKE  420
LFVQNLIQNN ELLHILGKGS SVVLLPKSSC DISLGSDLRV ASQLRINPRM PLGLSNYKEV  480
VKSSKDLASD EMLGGHEEIK GVKGFYPVKG KFASIYEGNR DSSYSGNDYL SRLSSNTLNI  540
STERENAVQG DVLSDQRLFS CVTCGIVCFS CVAVLQPTEQ ASRYLMSADC SFFNDWTVGS  600
GATRDGFTVA HVDAITSEQN LSTRWINKRD PNSVCDVPVQ SIHCKLQSTD QSNQLVEDTE  660
KGGGISALGL LASAYGNSSD SEDHNEPNAT DETNSANVSP QRNFQYTGSS PGDANGSHNL  720
SLSRVDSEEE APAHVMDCYS DPGSRRGDTK TRSPQTSDHA VEFETDNLAS RRSNGLEDKF  780
RDPVTASHAN PGYSPVTHGT ENMRFSKAIG LIENADMPFA PRSDEDSSRM HVFCLEHAAE  840
VEQQLCQIGG VHVFLLCHPE YPKIEAEAKL VAEELGIDYA WNDIIFGDAT KEDEERIRSA  900
LDSEDAIPGN GDWAVKLGIN LFYSANLSRS SLYSKQMPYN CVIYNAFGRN SPASSPTKLN  960
VYGRRSKQKK VVAGKWCGKV WMSNQVHPFL TQRDPQEQEQ ERNFHAWATS DENLDRKPEN  1020
VRKAETTKVA KKFNRKRKIR AGIASSKKVK CIETEDANSD DSLGGSSLRQ QQRFIRGKQP  1080
RLIEKEEAVS YDSQEDDSLL SQRILSRKKQ TEFVDREDAE SEDAEEEFTH QQPWRKLKGK  1140
QGKYVEEDDA VSGDSLDEGS LQQYRRVKRS WQAKCVERED AVSDDDFEET SHQMRRRIPK  1200
GRQIKSFERN DAISDDSQVD NSLKQYRRMP KGRQSKFVER DDAMSDDASE GDSQHDHHGR  1260
ISRGKQMKCM ETDDAFSDDS LEDNPQQHRG IPRSKGSKFT DREDVGSFDS LKRNSLQQHR  1320
RVCRSQLTKF IDRDDAVSSD SPDDSSLQQP RRILKSKQTK ILEREDAVSE DSLDDTSQQQ  1380
LRKTPRSRQG KFIEREDAAS YDSLEEDYQP SRTLRSRNKK APTPRQIKQE TPRNVKQGKR  1440
RTTKQVSSQQ MKQATPRNKN IKIEQSARQC NSYGEDELEG GPSTRLRKRV RKPLKESEPK  1500
PKEKKKQASK KKVKNASNVK TLSGHSTTKV RDEEAEYQCD MEGCTMSFGS KQELAMHKRN  1560
VCPVKGCGKK FFSHKYLVQH RRVHMDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY  1620
VCAEEGCGQT FRFVSDFSRH KRKTGHSVKK GRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	964	970	RRSKQKK
2	1485	1491	RLRKRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP02914