PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP03097

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 306aa MW: 34407.9 Da PI: 4.9927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP03097	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++q+G g+W++ ++ g+ R++k+c++rw +yl OMP03097 14 KGPWTPEEDQILINYINQFGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.6	5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l OMP03097 67 RGNFTQEEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MGRAPCCEKM GLKKGPWTPE EDQILINYIN QFGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TQEEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQYN 120 NGGSTSNENN PKKRQKTATT VAEAAAAKGN DSSKDKNKNN IKKEQDPVNC PNSPAVSSPQ 180 ESLSSEVSTV TTTSENHSSS NNSNMMSTKM ETQIEDEEFS EIDENFWSEV LSADNSSEFQ 240 VVASSDQLQA QTDHDYFPSS PLAAATLEPV NNDFGSNILF DNDDTNMDFW YNLFTRAGDL 300 PELPQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	7e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	OMP03097