PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03102
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 249aa    MW: 28043.2 Da    PI: 5.2596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03102genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18102151355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  OMP03102 102 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 151
               9*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MESSLFQYST PEFSPESSFG SPEPFSCWDE LLLEDNRNIS LPNFNFNDAE EMRWIDMLAA  60
EGPKESSESN STVDGSAVKE EEVSSSSASK HEQGSKKLEK TYRGVRKRPW GKFAAEIRDS  120
TRNGVRVWLG TFDSAEAAAL AYDQAAFSMR GSMATLNFPL EVVKESLQDM KHRFEEGCSP  180
VVALKKKHSQ RKRSKNKKIS KQITEARQQV QQGNNLLVLE DLGTDYLEQL LISSCESTTS  240
PWGKNFQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198QRKRSKNKK
2192198KRSKNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-49ERF family protein