PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03103
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 236aa    MW: 26817.7 Da    PI: 8.0741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03103genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17102150253
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
               +y+GVr ++ +g+++AeIrd + +g   r++lg+f +ae Aa a+++a+++ 
  OMP03103 102 CYRGVRKRP-WGKYAAEIRDSTRRG--VRVWLGTFESAEAAALAYDQAALST 150
               8********.**********43343..**********************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDSSFPQGLN SEVLLLENQQ GLLESFSSNN NELITFPNQD FLSFDIIDSK EFHQPPDHHD  60
HWSWSSRELS STSSSSGSSW RFVDEENLGS KKQQQQPKKE KCYRGVRKRP WGKYAAEIRD  120
STRRGVRVWL GTFESAEAAA LAYDQAALST QGSKAVLNFP VERVRESLRN MNYCCRDGAS  180
PAIELKQRNY VQRRSTSKNK MKQQSQSHSQ QAKSVVVLED LGSDYLEKLL SSSETA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-40ERF family protein