PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03410
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 240aa    MW: 27918.9 Da    PI: 4.6166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03410genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ ++ ++G  +W+  +++ g+ R++k+c++rw +yl
         OMP03410 19 KGTWSPEEDQKLIAYIMRYGIWDWNEMPKYAGLSRSGKSCRLRWMNYL 66
                     799*****************99************************97 PP
2Myb_DNA-binding51.91.7e-1672115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+e ++++ k+lG++ W++Ia++++  Rt++++k++w++
         OMP03410  72 RGNFTREEEETIIRLQKMLGNR-WSAIAAMLP-QRTDNDIKNYWNT 115
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MVRRPISCWN VNNNMLQKKG TWSPEEDQKL IAYIMRYGIW DWNEMPKYAG LSRSGKSCRL  60
RWMNYLKPDI RRGNFTREEE ETIIRLQKML GNRWSAIAAM LPQRTDNDIK NYWNTRLKKR  120
VENKLSASSS SAELITSSIE SEQENCSSLE YDFPEPNSDP YSPSGSSNDG VAAVVDNTNS  180
TYNTMEDNFA SSLIYWDWEL HGFSSDKEEF QAVSPNSQLY NLHDSYYGTV DDDFWDSPFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-50MYB family protein