PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP03411

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 187aa MW: 21905.6 Da PI: 6.9482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP03411	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.7e-11	2	43	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++lv +++++G W+ +++ g+ R++k+c++rw++yl OMP03411 2 EEDQKLVTYIARFGIWIWNQMPKHAGLSRSGKSCRLRWLNYL 43 9***********99**********************97 PP
2	Myb_DNA-binding	48.8	1.7e-15	49	92	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+e++++++k++G++ W++Ia++++ Rt++++k+++++ OMP03411 49 RGNITKEEEEIIAKLHKLMGNR-WAAIAAKLP-QRTDNEIKNYFNT 92 7999****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MEEDQKLVTY IARFGIWIWN QMPKHAGLSR SGKSCRLRWL NYLRPGIKRG NITKEEEEII 60 AKLHKLMGNR WAAIAAKLPQ RTDNEIKNYF NTRMRNRKSE GFPVAESKNQ KNDFQESSME 120 ESSSNPIQYH LSDSQYCQAM VSVKEEEKFH INVGSFETDQ VPVEGSNIDY DSFYVPFDDF 180 FWATSFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	7e-43	MYB family protein

Link Out ? help Back to Top
Ensembl	OMP03411