PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP03413

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 672aa MW: 74209 Da PI: 4.5872

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP03413	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.8e-10	522	565	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + OMP03413 522 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 565 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MDDSDIFSDE PLLTQARAGA KFQPKTKRKA KDKNSGSIPS KAPDVGNEEV AKLPSSGLDA 60 AHVIDESRSS EVTNPSQVAT ADSLLADVTV PDACDDLHSS FGRSVGESAD IFSDLECIDP 120 FLTQSSNNNG GIQIDDERMG TQEAGAFPDV NTDDILSDMT ILSGRRAGKF KPKPRLQTSV 180 SSHPAVVDSV THPPNSQFVP PETTCGESSI PDFPPGDVPN CSPIDLGAFI PPDPSTSEFL 240 ANEELPNLAE ASKTGVALPG DPPGATEKVS SNITQKKAFP VSNPAQTSKQ SSTGAEENEN 300 GKTRKRLRKE MTNPQVVHDP EEGACNGDDP AVEFPSNSAR DEDKDDDGNA SDEYNVESAS 360 PKRSSRRSKK PVAEKEKPPR KHKNANEKKA QKQKETKEAS DQPAKERPKR FSRSTRRKRK 420 FVDETLLQTP EDEIDFAKVA LKDIILLADY KERLAKKEAK ELKSSSTNQS NDNTMQEEYA 480 HNEESSHASE HDQGYKDDQT SIRAQSSSFC LNYQSFMDKE PRARWSKQDT ELFYGAIRQF 540 GPDFSLIQQL FPGRSRHQIK LKFKNEERRY PLRLSEALAS RANDHSYFEK VIEQLQQASE 600 AEQQSNGDVY VDLAHEEEVT PETTGEVAKP DQDEDVAGRD QEADVTEDHS PLKADETDDD 660 DYDFLSSYKS AF

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MDDSDIFSDE PLLTQARAGA KFQPKTKRKA KDKNSGSIPS KAPDVGNEEV AKLPSSGLDA  60
AHVIDESRSS EVTNPSQVAT ADSLLADVTV PDACDDLHSS FGRSVGESAD IFSDLECIDP  120
FLTQSSNNNG GIQIDDERMG TQEAGAFPDV NTDDILSDMT ILSGRRAGKF KPKPRLQTSV  180
SSHPAVVDSV THPPNSQFVP PETTCGESSI PDFPPGDVPN CSPIDLGAFI PPDPSTSEFL  240
ANEELPNLAE ASKTGVALPG DPPGATEKVS SNITQKKAFP VSNPAQTSKQ SSTGAEENEN  300
GKTRKRLRKE MTNPQVVHDP EEGACNGDDP AVEFPSNSAR DEDKDDDGNA SDEYNVESAS  360
PKRSSRRSKK PVAEKEKPPR KHKNANEKKA QKQKETKEAS DQPAKERPKR FSRSTRRKRK  420
FVDETLLQTP EDEIDFAKVA LKDIILLADY KERLAKKEAK ELKSSSTNQS NDNTMQEEYA  480
HNEESSHASE HDQGYKDDQT SIRAQSSSFC LNYQSFMDKE PRARWSKQDT ELFYGAIRQF  540
GPDFSLIQQL FPGRSRHQIK LKFKNEERRY PLRLSEALAS RANDHSYFEK VIEQLQQASE  600
AEQQSNGDVY VDLAHEEEVT PETTGEVAKP DQDEDVAGRD QEADVTEDHS PLKADETDDD  660
DYDFLSSYKS AF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-30	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMP03413