PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03687
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 145aa    MW: 16127.8 Da    PI: 10.9193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03687genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-1011103197
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
               f k+l+++d l  ++l    +f+e++g++++++   +l+  + rs+ v l  ++++++  ++ GW+ F+++  Lk gD + +++ gr s++  vvk++
  OMP03687  11 FAKILVRADLLPGAWLNPGQNFLESCGLDTTQDCSFRLKG-RRRSFAVGL--ERRGNTLQFSHGWNVFARESCLKKGDKCSLRFLGRdSQG--VVKIL 103
               778888888888888888899********99998899887.7799*****..*******************************99887999..77775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MAPVAQPKLK FAKILVRADL LPGAWLNPGQ NFLESCGLDT TQDCSFRLKG RRRSFAVGLE  60
RRGNTLQFSH GWNVFARESC LKKGDKCSLR FLGRDSQGVV KILVKRTPKH MLPSTENAAP  120
VVVLREGAWK EAGKEATSVR YLTTV