PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03708
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 136aa    MW: 15903.3 Da    PI: 9.3519
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03708genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-142831797
              E--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3 17 vlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               lp +f +++      ++++      +le+ +g+sW v++    k++++++++GWkeFv++  L  g  +vF+++g+  f++ + +f
  OMP03708  2 KLPPQFSKQFqrcivdKLPED---RFILETCDGKSWAVEVVNVAKDDQVYFREGWKEFVNDDSLGIGGLIVFEYQGD--FKFDLDIF 83
              688888888888887544433...599*************99999999*************************9885..55566666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MKLPPQFSKQ FQRCIVDKLP EDRFILETCD GKSWAVEVVN VAKDDQVYFR EGWKEFVNDD  60
SLGIGGLIVF EYQGDFKFDL DIFGNAPEKG YLQIFGRYII YPKRKRKMNQ PWGADKGQVK  120
LKRLTYLVLR NSSPNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-11B3 family protein