PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP03986
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 92aa    MW: 10471.9 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP03986genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-0724582054
              HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                +Lr+llP+ +   +s K+s + +L+++++YI+sL
  OMP03986 24 VTKLRQLLPEiR-DRRSDKVSASKVLQETCNYIRSL 58
              579*******76.99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MSSRRSRQSA GASRISDDQI IELVTKLRQL LPEIRDRRSD KVSASKVLQE TCNYIRSLHR  60
EVDDLSERLS QLLTTIDADS AEASIIRSLI MQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.18e-37bHLH family protein