PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP04838

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 180aa MW: 20547.3 Da PI: 9.6064

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP04838	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.1	1.2e-38	29	106	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C adl +ak+yhrrhkvC+ h+ka+ ++v+g++qrfCqqCsrfhels+fD +krsCr+rLa+hnerrrk+q+ OMP04838 29 CCQADECGADLRDAKQYHRRHKVCQPHAKAAFAFVKGIRQRFCQQCSRFHELSQFDGTKRSCRDRLAGHNERRRKAQS 106 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MIRVVPRERF ERTCAQQSHS AAASANVLCC QADECGADLR DAKQYHRRHK VCQPHAKAAF 60 AFVKGIRQRF CQQCSRFHEL SQFDGTKRSC RDRLAGHNER RRKAQSEQQQ EQEAEDVELE 120 ASPTSNIMTS SSSTRHPKHG GELTLQGCAN TKHFRIRLLT TTFNIFLLRL FGTTLLLSMI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	2e-31	SBP family protein

Link Out ? help Back to Top
Ensembl	OMP04838