PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP04954

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 522aa MW: 57022.3 Da PI: 10.6986

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP04954	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.1e-09	8	41	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 grW t+E++ll av ++G+++Wk++a+++ +Rt OMP04954 8 GRWGTWEELLLGGAVLRHGTRDWKLVASELR-TRT 41 9****************************.9 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MGTEMITGRW GTWEELLLGG AVLRHGTRDW KLVASELRTR TVSPFAVTPE VCKAKYEDLR 60 QRFSGCKGWF EELRKQRMAE LRQALEKSED SIGSLESKLE SLKAEKKDDS RVYDSSQTES 120 AMPCVKSEGI EFSSKDGLSA GSFTQEAQTN WSPDSQIPAA VPAEELDSKP GDSPTSDRER 180 VSSIDKLVDT FCGRQLRSVR KRRGKRKRKD CSKDVKEGSV GESEFLGPAD VASASRGKET 240 SVSNSPQIAR SSGVEDQSRD SSKEGMDDIV GIFSSVAEND CASVFRRRLD SQKRGRYKKM 300 ILRHMDFDTI RSRIATNSIM SVKELFRDML LVANNALVFY SKNTREYKSA MLLRHIVTAT 360 LRQHFKEYGS KVPVTTFTPS RPMHKPPAKP RSIRPGNRKP PAKAANDENA VAGNANASKK 420 TANAGSPLSV ESLPATKKNS AANASKKAAN AGSPPSVESS PATKKGSAAN ASKKTAIAGS 480 PPSVESSPAT KKGSARQKKV SRGRAGQKNE SPTKGRKRTR AR

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MGTEMITGRW GTWEELLLGG AVLRHGTRDW KLVASELRTR TVSPFAVTPE VCKAKYEDLR  60
QRFSGCKGWF EELRKQRMAE LRQALEKSED SIGSLESKLE SLKAEKKDDS RVYDSSQTES  120
AMPCVKSEGI EFSSKDGLSA GSFTQEAQTN WSPDSQIPAA VPAEELDSKP GDSPTSDRER  180
VSSIDKLVDT FCGRQLRSVR KRRGKRKRKD CSKDVKEGSV GESEFLGPAD VASASRGKET  240
SVSNSPQIAR SSGVEDQSRD SSKEGMDDIV GIFSSVAEND CASVFRRRLD SQKRGRYKKM  300
ILRHMDFDTI RSRIATNSIM SVKELFRDML LVANNALVFY SKNTREYKSA MLLRHIVTAT  360
LRQHFKEYGS KVPVTTFTPS RPMHKPPAKP RSIRPGNRKP PAKAANDENA VAGNANASKK  420
TANAGSPLSV ESLPATKKNS AANASKKAAN AGSPPSVESS PATKKGSAAN ASKKTAIAGS  480
PPSVESSPAT KKGSARQKKV SRGRAGQKNE SPTKGRKRTR AR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	210	RKRRGKRKRKD
2	202	212	RKRRGKRKRKD
3	515	521	GRKRTRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	4e-29	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMP04954