PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP04974
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 151aa    MW: 17265.6 Da    PI: 7.1654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP04974genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-12101148247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        WT+ E++ lv++v+++G+  W+ I +  +    +Rt  ++k++w+++
         OMP04974 101 TFWTKKEEDVLVQGVHRHGKA-WTHILNSNPtvfRNRTSVDLKDKWRNL 148
                      57*****************99.*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MRVTETSTST TEKQCKFVSL KDLIEGTNLD SAEKEGEVDL TMDSGLNHVV VDLTMDSSPV  60
MKEQGVKPVV VDLTMDSSPV LKEHDLNSVE QARKLLRRPR TFWTKKEEDV LVQGVHRHGK  120
AWTHILNSNP TVFRNRTSVD LKDKWRNLHR D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-17MYB_related family protein