PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP05312
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 187aa    MW: 20866.3 Da    PI: 3.7436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP05312genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-112760135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     +g+WT eEd  l+ +v+ +G g+W+++ar  g  +
         OMP05312 27 KGPWTDEEDSMLKAYVHIHGEGRWNSVARLSG-QL 60
                     79****************************99.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MDHMIYESGF ISETHQQSEE EMMDVRKGPW TDEEDSMLKA YVHIHGEGRW NSVARLSGQL  60
SSSATATTAT TYMDNIITTG QINYVNTTGS VQVDPSLLPE LSGTSSDSQV SSVSDCYNNN  120
PQQSVSNYNQ NNNLQNGSGS CQGNYWTNTF EATEELESNG WLGSGDSMES VWNEENIWFL  180
QQQLFDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.17e-12MYB family protein