PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP05739
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 154aa    MW: 18183.8 Da    PI: 9.8983
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP05739genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.91.4e-2541323128
       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
               +GfrF+P++  l+  yL +kv+g+k+e+ ++++e+d+y   ePw++      ++++++++yfF++ +kk++t++r+nr++ sg+W+    +ke+++    +
  OMP05739   4 VGFRFEPSEAMLL-GYLYNKVSGNKMEMGNMVQECDLYGQkEPWEIWDmfgGATHNKEDLYFFTRLKKKSSTDSRTNRSVGSGTWNDNSDTKEIKHPrhPS 103
               7********9999.9*************999******96559****73244444456688***********************************987677 PP

       NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
               ++ g++k   + +g+  +    +W++he++l
  OMP05739 104 QTLGIRKRYRYEDGKPDQ--VGKWILHEFSL 132
               88*********9887777..89*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MELVGFRFEP SEAMLLGYLY NKVSGNKMEM GNMVQECDLY GQKEPWEIWD MFGGATHNKE  60
DLYFFTRLKK KSSTDSRTNR SVGSGTWNDN SDTKEIKHPR HPSQTLGIRK RYRYEDGKPD  120
QVGKWILHEF SLKIIETNMV LCRLRKNQRK QKQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-18NAC family protein