PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP06058

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 264aa MW: 26964.2 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06058	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	30	117	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..k 89 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++++s + + OMP06058 30 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGGANSTSlsS 117 79*****************************************************************9777.33333333333333221 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MSNSEGAAAN GAIMDPQRQQ STGNNGALVV KKPPSKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSVRGGA NSTSLSSTTS 120 SSALDHKPLL GPTPFILGKR VRADDDNAGK DDSGGVTVGP GVGSIVGPAG TGGFWALQAR 180 PDFGQVWSFA PPPPPEMMVQ SAAAAAAAAA AHQPAAAALF VQQQQAMGEA SAARVGNYLP 240 GHLNLLASLS GAPGGSGRRD DDPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-69	TCP family protein

Link Out ? help Back to Top
Ensembl	OMP06058