PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP06341

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 683aa MW: 76814 Da PI: 4.4591

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06341	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	7.3e-53	23	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 ppGfrFhPtdeelv +yLk+k+ +kkl+l ++i+e+d+yk++P++Lp + +++++++w+fFs+rd+ky++g r+nr t++gyWkatgkd++v++ ++++v OMP06341 23 PPGFRFHPTDEELVLYYLKRKICNKKLKL-DIIREIDVYKWDPEELPeQsVLRTGDRQWFFFSPRDRKYPNGGRSNRGTRHGYWKATGKDRTVTC-NSRTV 121 8**************************.99**********95346778999**********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfy+grap+ge+tdWvmhey+l OMP06341 122 GVKKTLVFYRGRAPNGERTDWVMHEYTL 149 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MTVTATVVAA RADSCLGDDQ VWPPGFRFHP TDEELVLYYL KRKICNKKLK LDIIREIDVY 60 KWDPEELPEQ SVLRTGDRQW FFFSPRDRKY PNGGRSNRGT RHGYWKATGK DRTVTCNSRT 120 VGVKKTLVFY RGRAPNGERT DWVMHEYTLD EEELNRCQNI KDYYALYKLY KKSGPGPKNG 180 EQYGAPFKEE EWADEDYVSN TVTVTPPAKL HNEAVPDKNV KANGPVESPL NDIEEFMRQL 240 GDEPAIPEPQ PQLGYLLPQV VGEEETQSTL VDPSPRNVLC PEPVRVFKDQ ASFELSQSPT 300 SKLLSPEAPD VTSVADHFEQ LPHVSEEDFL EIDDLIGPEP LTYGIEKPAE NLPFNELDGL 360 SEYDLFHDAS MFLQDMGPID QESVLFSHAD NMMDQVNYQW EQQSNRSLLD QQLHFQSNVN 420 VMGQQLQPQS NINYMDQQLQ PQSNAFGVYQ QLQPQLNSFG GNQQLQFQYN TFEDAMLNQV 480 NQELQFQPDE NELNQQLQMD QTSSPLWTHD QSSDIFTPGS NLGNASPTSG VVFNGNNQGQ 540 GDKKDDGASR LGSAMWSFVE SIPTTPASAS ESPLVNRAFE RMSSLSRLRL NARYADASAV 600 TSAATPRRTA ERLGLPYLSA YLDSTGTNFR HGANFATGGS CIQPDCGKKV NGTVYGSSCD 660 DPSRHIIAFL NMPLSIQEGC DQS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MTVTATVVAA RADSCLGDDQ VWPPGFRFHP TDEELVLYYL KRKICNKKLK LDIIREIDVY  60
KWDPEELPEQ SVLRTGDRQW FFFSPRDRKY PNGGRSNRGT RHGYWKATGK DRTVTCNSRT  120
VGVKKTLVFY RGRAPNGERT DWVMHEYTLD EEELNRCQNI KDYYALYKLY KKSGPGPKNG  180
EQYGAPFKEE EWADEDYVSN TVTVTPPAKL HNEAVPDKNV KANGPVESPL NDIEEFMRQL  240
GDEPAIPEPQ PQLGYLLPQV VGEEETQSTL VDPSPRNVLC PEPVRVFKDQ ASFELSQSPT  300
SKLLSPEAPD VTSVADHFEQ LPHVSEEDFL EIDDLIGPEP LTYGIEKPAE NLPFNELDGL  360
SEYDLFHDAS MFLQDMGPID QESVLFSHAD NMMDQVNYQW EQQSNRSLLD QQLHFQSNVN  420
VMGQQLQPQS NINYMDQQLQ PQSNAFGVYQ QLQPQLNSFG GNQQLQFQYN TFEDAMLNQV  480
NQELQFQPDE NELNQQLQMD QTSSPLWTHD QSSDIFTPGS NLGNASPTSG VVFNGNNQGQ  540
GDKKDDGASR LGSAMWSFVE SIPTTPASAS ESPLVNRAFE RMSSLSRLRL NARYADASAV  600
TSAATPRRTA ERLGLPYLSA YLDSTGTNFR HGANFATGGS CIQPDCGKKV NGTVYGSSCD  660
DPSRHIIAFL NMPLSIQEGC DQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-127	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP06341