PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP06507

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 416aa MW: 44340.6 Da PI: 7.7616

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06507	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.9	5.9e-41	88	216	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + OMP06507 88 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssgfnsnfs 188 789******************************************************************99987777777777656554444444444445 PP TCP 89 ...........................k 89 OMP06507 189 mnqrrslfpgigletsptflnfqsssnL 216 5455555555555444444444444431 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEGGGSDDHQ LHHHHHHLHH HQQQHHHHHQ HRPTFPFQLL EKKEEDNNNQ PCSSSSSPPF 60 PSLPITSTSP SSDQPSLQIS PEPSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ 120 LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS 180 SGFNSNFSMN QRRSLFPGIG LETSPTFLNF QSSSNLSSMF QATTKQELRE SSNTTSLDIS 240 ETEEGSLGRK RRPETDLSSQ HQMGSYLLQS STGAIPASHA AQIPANFWMV TNSNNQVMSG 300 DPIWTFPSVN NSGLYRGTMS SGLHFMNFPA PMALLPGQQL GSTSGGGGAA AGGGGGGNSG 360 ISEGHLNMLA GLNPYRQVSG TGISESQASG SHSHHGGGGG GGGGGDDRHD STSHHS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEGGGSDDHQ LHHHHHHLHH HQQQHHHHHQ HRPTFPFQLL EKKEEDNNNQ PCSSSSSPPF  60
PSLPITSTSP SSDQPSLQIS PEPSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS  180
SGFNSNFSMN QRRSLFPGIG LETSPTFLNF QSSSNLSSMF QATTKQELRE SSNTTSLDIS  240
ETEEGSLGRK RRPETDLSSQ HQMGSYLLQS STGAIPASHA AQIPANFWMV TNSNNQVMSG  300
DPIWTFPSVN NSGLYRGTMS SGLHFMNFPA PMALLPGQQL GSTSGGGGAA AGGGGGGNSG  360
ISEGHLNMLA GLNPYRQVSG TGISESQASG SHSHHGGGGG GGGGGDDRHD STSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-51	TCP family protein

Link Out ? help Back to Top
Ensembl	OMP06507