PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP06564

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 456aa MW: 50152.2 Da PI: 9.9406

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP06564	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H OMP06564 8 CEICNKGFQRDQNLQLHRRGH 28 *******************88 PP
2	zf-C2H2	12	0.00063	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + OMP06564 83 WKCEKCSKKYAVQSDWKAHSKIC 105 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYIC PEKTCVHHDP 60 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR 120 KDSFITHRAF CDALAEESAR FTSVPSTMNP AAFRNDLMIN NNNGMQQQFP SSGFSGSDLV 180 VDNLNGNGTQ KPTRLQLWLD QANSQLNPMG ISSNNANGFL AQTKTNTSLG DLGIAPMNMN 240 MNMLGSLSQA QWLNKYPEAS FPSVSLSAAL PRGPKEEEEN KANINLSESI TSLYNSNINA 300 RNSLQQGQAG VAAAHMSATA LLQKAAQMGS TRSNPAAFNN SSSFGSPSTM SSSNNTNNEV 360 YKLFKQANNN NQSAADSINE LVSSLSSSTQ ATKNVDNLLM QANGKQGNKH NMTKSNEVEG 420 SLTRDFLGVG AGESSRPFLQ QELAKFASMG SVQPWN

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYIC PEKTCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTSVPSTMNP AAFRNDLMIN NNNGMQQQFP SSGFSGSDLV  180
VDNLNGNGTQ KPTRLQLWLD QANSQLNPMG ISSNNANGFL AQTKTNTSLG DLGIAPMNMN  240
MNMLGSLSQA QWLNKYPEAS FPSVSLSAAL PRGPKEEEEN KANINLSESI TSLYNSNINA  300
RNSLQQGQAG VAAAHMSATA LLQKAAQMGS TRSNPAAFNN SSSFGSPSTM SSSNNTNNEV  360
YKLFKQANNN NQSAADSINE LVSSLSSSTQ ATKNVDNLLM QANGKQGNKH NMTKSNEVEG  420
SLTRDFLGVG AGESSRPFLQ QELAKFASMG SVQPWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	46	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	5e-98	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP06564